FastQCFastQC Report
Tue 2 May 2023
SRR3575253_GSM2175505_H3K4me1_140127_rep2_Homo_sapiens_ChIP-Seq_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3575253_GSM2175505_H3K4me1_140127_rep2_Homo_sapiens_ChIP-Seq_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9205398
Total Bases469.4 Mbp
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGC289000.31394623024447177TruSeq Adapter, Index 2 (100% over 50bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)