FastQCFastQC Report
Mon 1 May 2023
SRR1040789_GSM1276712_E14_d0_RNA-Seq_Mus_musculus_RNA-Seq_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1040789_GSM1276712_E14_d0_RNA-Seq_Mus_musculus_RNA-Seq_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12500
Total Bases437.5 kbp
Sequences flagged as poor quality0
Sequence length35
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA850.6799999999999999No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)