reStrainingOrder: Summary Report

SRR6994034_WGBS_5M_R1_bismark_bt2.bam

Data processed at 10:35:08 on 2019-07-26


General Statistics

Different positions on chr1 covered: 408975

Strain Compatibility Scores

Strain Agreeing Calls Disagreeing Calls Compatibility Percentage
C57BL_6NJ 436969 3270 99.26
C57BL_10J 436545 3694 99.16
C58_J 420479 19760 95.51
C57L_J 412895 27344 93.79
BALB_cJ 412814 27425 93.77
C57BR_cdJ 411932 28307 93.57
SEA_GnJ 411700 28539 93.52
CBA_J 407427 32812 92.55
NZB_B1NJ 406862 33377 92.42
C3H_HeH 406576 33663 92.35
C3H_HeJ 405734 34505 92.16
129S5SvEvBrd 405691 34548 92.15
A_J 405292 34947 92.06
NZW_LacJ 405146 35093 92.03
LP_J 404710 35529 91.93
129S1_SvImJ 404723 35516 91.93
NOD_ShiLtJ 404523 35716 91.89
FVB_NJ 404274 35965 91.83
NZO_HlLtJ 404078 36161 91.79
129P2_OlaHsd 404115 36124 91.79
I_LnJ 403772 36467 91.72
BTBR_T+_Itpr3tf_J 402981 37258 91.54
KK_HiJ 402334 37905 91.39
BUB_BnJ 401520 38719 91.21
ST_bJ 400247 39992 90.92
RF_J 400259 39980 90.92
AKR_J 398848 41391 90.60
DBA_1J 398209 42030 90.45
DBA_2J 397060 43179 90.19
LEWES_EiJ 394907 45332 89.70
WSB_EiJ 394331 45908 89.57
ZALENDE_EiJ 383682 56557 87.15
PWK_PhJ 322309 117930 73.21
MOLF_EiJ 320052 120187 72.70
CAST_EiJ 310832 129407 70.61
SPRET_EiJ 176649 263590 40.13

Potential Hybrid Strains - Compatibility Scores

Potential Hybrid Agreeing Calls Disagreeing Calls Compatibility % Strain1 % Strain2 %
C57BL_6NJ/SPRET_EiJ 438308 1931 99.56 99.5 0.5
C57BL_10J/SPRET_EiJ 438124 2115 99.52 99.5 0.5
C57BL_6NJ/CAST_EiJ 437702 2537 99.42 99.4 0.6
C57BL_6NJ/PWK_PhJ 437617 2622 99.40 99.4 0.6
C57BL_10J/CAST_EiJ 437518 2721 99.38 99.4 0.6
C57BL_6NJ/MOLF_EiJ 437518 2721 99.38 99.5 0.5
C57BL_10J/PWK_PhJ 437408 2831 99.36 99.4 0.6
C57BL_6NJ/ZALENDE_EiJ 437322 2917 99.34 99.3 0.7
C57BL_10J/MOLF_EiJ 437320 2919 99.34 99.5 0.5
C57BL_6NJ/C57BR_cdJ 437256 2983 99.32 98.9 1.1
C57BL_6NJ/DBA_2J 437225 3014 99.32 99.4 0.6
C57BL_6NJ/RF_J 437225 3014 99.32 99.3 0.7
AKR_J/C57BL_6NJ 437239 3000 99.32 99.3 0.7
C57BL_6NJ/WSB_EiJ 437227 3012 99.32 99.4 0.6
C57BL_6NJ/KK_HiJ 437181 3058 99.31 99.4 0.6
C57BL_6NJ/LEWES_EiJ 437223 3016 99.31 99.4 0.6
C57BL_6NJ/ST_bJ 437197 3042 99.31 99.4 0.6
C57BL_6NJ/NOD_ShiLtJ 437209 3030 99.31 99.3 0.7
C57BL_6NJ/DBA_1J 437213 3026 99.31 99.4 0.6
C57BL_6NJ/LP_J 437165 3074 99.30 99.4 0.6
129S1_SvImJ/C57BL_6NJ 437176 3063 99.30 99.4 0.6
C57BL_10J/C57L_J 437172 3067 99.30 99.2 0.8
BTBR_T+_Itpr3tf_J/C57BL_6NJ 437169 3070 99.30 99.4 0.6
C57BL_6NJ/NZO_HlLtJ 437161 3078 99.30 99.4 0.6
C57BL_10J/NZO_HlLtJ 437137 3102 99.30 99.3 0.7
129P2_OlaHsd/C57BL_6NJ 437166 3073 99.30 99.4 0.6
C57BL_6NJ/CBA_J 437176 3063 99.30 99.3 0.7
C57BL_6NJ/FVB_NJ 437157 3082 99.30 99.4 0.6
C3H_HeJ/C57BL_6NJ 437150 3089 99.30 99.4 0.6
C57BL_6NJ/I_LnJ 437156 3083 99.30 99.4 0.6