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Trim Galore!

Function A wrapper tool around Cutadapt and FastQC to consistently apply quality and adapter trimming to FastQ files, with some extra functionality for MspI-digested RRBS-type (Reduced Representation Bisufite-Seq) libraries.
Language Perl
Requirements A functional version of Cutadapt and optionally FastQC are required.
Code Maturity Stable.
Code Released Yes, under GNU GPL v3 or later.
Initial Contact Felix Krueger

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Trim Galore! is a wrapper script to automate quality and adapter trimming as well as quality control, with some added functionality to remove biased methylation positions for RRBS sequence files (for directional, non-directional (or paired-end) sequencing). It's main features are:

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