Saving Quantitation Annotation Tracks

Having created a set of quantiations in SeqMonk you can choose to export these in a format which would allow them to be imported into other genome browsers (UCSC etc) or systems (IGV etc).

The data is exported in bedGraph format which can easily be converted to bigWig format if you prefer using the free tools availble from UCSC.

To export your data select File > Export Current View > BEDGraph. The quantitated data for the currently selected Probe List and the currently active data store will be saved.