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SeqMonk

Function A tool to visualise and analyse high throughput mapped sequence data
Language Java
Requirements A suitable Java Runtime Environment
Code Maturity Stable. This code is being widely used for real work, although SeqMonk is still under active development.
Code Released Yes, under GPL v3 or later.
Initial Contact Simon Andrews

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SeqMonk is a program to enable the visualisation and analysis of mapped sequence data. It was written for use with mapped next generation sequence data but can in theory be used for any dataset which can be expressed as a series of genomic positions. It's main features are:

Documentation

A copy of the SeqMonk documentation is available for you to try before you buy (well download..).

You can also look at the material for our SeqMonk training course which might provide a better introduction if you're using the program for the first time. Or the material for our advanced SeqMonk course for a more in depth look at how to apply SeqMonk to your data.

Changelog