reStrainingOrder: Summary Report

SRR377634_F1r_WGBS_R1_bismark_bt2.bam

Data processed at 14:29:28 on 2019-07-25


General Statistics

Different positions on chr1 covered: 150165

Strain Compatibility Scores

Strain Agreeing Calls Disagreeing Calls Compatibility Percentage
129S1_SvImJ 132884 22972 85.26
129P2_OlaHsd 132665 23191 85.12
129S5SvEvBrd 132655 23201 85.11
LP_J 131038 24818 84.08
CAST_EiJ 130205 25651 83.54
BTBR_T+_Itpr3tf_J 129072 26784 82.81
C3H_HeH 129002 26854 82.77
C3H_HeJ 128956 26900 82.74
KK_HiJ 128809 27047 82.65
NZW_LacJ 128790 27066 82.63
NOD_ShiLtJ 128692 27164 82.57
FVB_NJ 128682 27174 82.56
NZB_B1NJ 128656 27200 82.55
A_J 128564 27292 82.49
SEA_GnJ 128448 27408 82.41
ST_bJ 128338 27518 82.34
NZO_HlLtJ 128180 27676 82.24
C57BL_6NJ 127984 27872 82.12
C57BL_10J 127977 27879 82.11
BALB_cJ 127946 27910 82.09
AKR_J 127817 28039 82.01
CBA_J 127672 28184 81.92
RF_J 127477 28379 81.79
BUB_BnJ 127459 28397 81.78
C57BR_cdJ 127442 28414 81.77
I_LnJ 127419 28437 81.75
C58_J 127175 28681 81.60
C57L_J 127009 28847 81.49
DBA_2J 126549 29307 81.20
DBA_1J 126509 29347 81.17
LEWES_EiJ 125881 29975 80.77
WSB_EiJ 125720 30136 80.66
ZALENDE_EiJ 124070 31786 79.61
MOLF_EiJ 111990 43866 71.85
PWK_PhJ 111611 44245 71.61
SPRET_EiJ 60520 95336 38.83

Potential Hybrid Strains - Compatibility Scores

Potential Hybrid Agreeing Calls Disagreeing Calls Compatibility % Strain1 % Strain2 %
129S1_SvImJ/CAST_EiJ 154443 1413 99.09 53.0 47.0
129P2_OlaHsd/CAST_EiJ 154318 1538 99.01 53.1 46.9
129S5SvEvBrd/CAST_EiJ 154284 1572 98.99 53.0 47.0
CAST_EiJ/LP_J 153394 2462 98.42 53.0 47.0
C3H_HeJ/CAST_EiJ 152606 3250 97.91 53.7 46.3
C3H_HeH/CAST_EiJ 152588 3268 97.90 53.6 46.4
A_J/CAST_EiJ 152533 3323 97.87 53.9 46.1
CAST_EiJ/FVB_NJ 152471 3385 97.83 53.9 46.1
CAST_EiJ/NOD_ShiLtJ 152458 3398 97.82 53.5 46.5
BTBR_T+_Itpr3tf_J/CAST_EiJ 152324 3532 97.73 53.7 46.3
CAST_EiJ/KK_HiJ 152298 3558 97.72 54.2 45.8
CAST_EiJ/NZB_B1NJ 152264 3592 97.70 53.6 46.4
CAST_EiJ/SEA_GnJ 152277 3579 97.70 52.3 47.7
CAST_EiJ/ST_bJ 152223 3633 97.67 54.9 45.1
CAST_EiJ/NZW_LacJ 152167 3689 97.63 53.7 46.3
CAST_EiJ/NZO_HlLtJ 152080 3776 97.58 54.1 45.9
BALB_cJ/CAST_EiJ 152048 3808 97.56 52.2 47.8
BUB_BnJ/CAST_EiJ 151937 3919 97.49 54.7 45.3
CAST_EiJ/CBA_J 151943 3913 97.49 53.3 46.7
AKR_J/CAST_EiJ 151773 4083 97.38 55.0 45.0
CAST_EiJ/RF_J 151757 4099 97.37 55.0 45.0
C58_J/CAST_EiJ 151633 4223 97.29 50.9 49.1
C57BR_cdJ/CAST_EiJ 151624 4232 97.28 52.5 47.5
C57BL_10J/CAST_EiJ 151598 4258 97.27 47.6 52.4
CAST_EiJ/I_LnJ 151593 4263 97.26 54.1 45.9
C57BL_6NJ/CAST_EiJ 151591 4265 97.26 47.5 52.5
CAST_EiJ/DBA_2J 151424 4432 97.16 55.2 44.8
C57L_J/CAST_EiJ 151371 4485 97.12 52.2 47.8
CAST_EiJ/DBA_1J 151356 4500 97.11 55.0 45.0
CAST_EiJ/WSB_EiJ 150990 4866 96.88 56.3 43.7